Bones - Season 6 Episode 3 - When Booth and Brennan are called to investigate decomposed remains found at the Jersey Shore, the team IDs the victim as Richie "The V" Genaro, a 23-year-old who partied the night before at a popular nightclub. Booth and Brennan question Genaro's peers and the club bouncer, and Brennan surprisingly proves her pop culture savvy and anthropological expertise after watching what she believes to be a documentary on the inhabitants of the Jersey Shore, but was in actuality a reality show set there. Meanwhile, at the lab, the team grows fond of Booth's girlfriend, Hannah, and Angela tries to keep her pregnancy a secret.
Bones - Season 6 Episode 4 - The team goes on a search for missing body parts after they find a decomposing skull and hands in a dumpster. After the victim is identified as a bounty hunter who was searching for a killer named Braverman, the team discovers that someone else is looking for Braverman as well, resulting in a chase with an unexpected suspect. Meanwhile, Brennan makes children's show star Professor Bunsen Jude "The Science Dude" her new intern.
Bones - Season 6 Episode 5 - A ballet dancer is murdered and Booth and Brennan are led to suspect a group of street dancers in the crime. Meanwhile, Booth's girlfriend Hannah is shot, leaving Booth to worry for her health.
Bones - Season 6 Episode 6 - The past and present collide when human remains from a 150-year-old slave ship, the Amelia Rose, surface. The team is tasked to give the deceased a proper burial but make an unforeseen discovery linked to a recent murder. In the course of the investigation, Booth and Brennan are led to a different kind of ship, a "Cougar" cruise, where they learn their victim was seen moments before his death. Meanwhile, Sweets struggles to maintain a casual relationship with Daisy, and Cam discovers a surprising and emotional connection to the Amelia Rose
Bones - Season 6 Episode 7 - When human remains are discovered in the world's largest chocolate bar, a 'sweet" event for a candymaker quickly turns bitter. As eccentric chocolate factory owner Jimmy Walpert deals with the tragedy, the team soon discovers that the victim was a mysterious character whose past is full of secrets, lies and love affairs.
Bones - Season 6 Episode 8 - Booth and Brennan's next case leads them to a crime scene where a human carcass has literally melted into the dashboard of a charred truck. As the team investigates the case, they discover a gunshot wound in the victim, but learn that neither the fire nor the bullet was the cause of the victim's death"¦
Bones - Season 6 Episode 10 - An unidentifiable body is discovered in the shower of an upscale home belonging to a young female socialite. With the help of nosey bones expert and Jeffersonian 'squint" Clark Edison, skeletal reconstruction and evidence in the drain reveal that the victim was a young girl employed by a counterfeit handbag distributor. The team learns that the victim supplied counterfeit purses to her socialite acquaintance, and after interrogating the self-centered socialite and sifting through footage on a hidden camera, they discover evidence linking them to the murderer. Meanwhile, Angela and Hodgins discuss their future home and where they want to raise a family, and Booth opens up to Hannah about Brennan's feelings for him.
Bones - Season 6 Episode 11 - Before the final appeal of her death sentence, Heather Taffet (Deirdre Lovejoy), aka the Grave Digger, is hit by a sniper's bullet, but the Jeffersonian team's ensuing investigation could point to either Booth or Max (Ryan O"Neal) as a suspect. Meanwhile, Sweets is unnerved by an encounter with this convicted killer.